SiYuan is a personal knowledge management system. Prior to 3.5.10, a path traversal vulnerability in the /export endpoint allows an attacker to read arbitrary files from the server filesystem. By exploiting double‑encoded traversal sequences, an attacker can access sensitive files such as conf/conf.json, which contains secrets including the API token, cookie signing key, and workspace access authentication code. Leaking these secrets may enable administrative access to the SiYuan kernel API, and in certain deployment scenarios could potentially be chained into remote code execution (RCE). This vulnerability is fixed in 3.5.10.

SiYuan is a personal knowledge management system. Prior to 3.5.10, a privilege escalation vulnerability exists in the publish service of SiYuan Note that allows low-privilege publish accounts (RoleReader) to modify notebook content via the /api/block/appendHeadingChildren API endpoint. The endpoint requires only the model.CheckAuth role, which accepts RoleReader sessions, but it does not enforce stricter checks, such as CheckAdminRole or CheckReadonly. This allows remote authenticated publish users with read-only privileges to append new blocks to existing documents, compromising the integrity of stored notes.

SiYuan is a personal knowledge management system. Prior to version 3.5.9, an unauthenticated reflected XSS vulnerability exists in the dynamic icon API endpoint "GET /api/icon/getDynamicIcon" when type=8, attacker-controlled content is embedded into SVG output without escaping. Because the endpoint is unauthenticated and returns image/svg+xml, a crafted URL can inject executable SVG/HTML event handlers (for example onerror) and run JavaScript in the SiYuan web origin. This can be chained to perform authenticated API actions and exfiltrate sensitive data when a logged-in user opens the malicious link. This issue has been patched in version 3.5.9.

SiYuan is a personal knowledge management system. Prior to version 3.6.0, the /api/query/sql lets a user run sql directly, but it only checks basic auth, not admin rights, any logged-in user, even readers, can run any sql query on the database. This issue has been patched in version 3.6.0.

SiYuan is a personal knowledge management system. Prior to 3.5.5, the /api/file/getFile endpoint uses case-sensitive string equality checks to block access to sensitive files. On case-insensitive file systems such as Windows, attackers can bypass restrictions using mixed-case paths and read protected configuration files. This vulnerability is fixed in 3.5.5.

Lute is a structured Markdown engine supporting Go and JavaScript. Lute 1.7.6 and earlier (as used in SiYuan before) has a Stored Cross-Site Scripting (XSS) vulnerability in the Markdown rendering engine. An attacker can inject malicious JavaScript into a Markdown text/note. When another user clicks the rendered content, the script executes in the context of their session.

SiYuan is a personal knowledge management system. Prior to version 3.5.5, the /api/file/copyFile endpoint does not validate the dest parameter, allowing authenticated users to write files to arbitrary locations on the filesystem. This can lead to Remote Code Execution (RCE) by writing to sensitive locations such as cron jobs, SSH authorized_keys, or shell configuration files. This issue has been patched in version 3.5.5.

SiYuan is a personal knowledge management system. Versions prior to 3.5.4 have a stored Cross-Site Scripting (XSS) vulnerability that allows an attacker to inject arbitrary HTML attributes into the `icon` attribute of a block via the `/api/attr/setBlockAttrs` API. The payload is later rendered in the dynamic icon feature in an unsanitized context, leading to stored XSS and, in the desktop environment, potential remote code execution (RCE). This issue bypasses the previous fix for issue `#15970` (XSS → RCE via dynamic icons). Version 3.5.4 contains an updated fix.

SiYuan is a personal knowledge management system. Versions prior to 3.5.4 contain a logic vulnerability in the /api/file/globalCopyFiles endpoint. The function allows authenticated users to copy files from any location on the server's filesystem into the application's workspace without proper path validation. The vulnerability exists in the api/file.go source code. The function globalCopyFiles accepts a list of source paths (srcs) from the JSON request body. While the code checks if the source file exists using filelock.IsExist(src), it fails to validate whether the source path resides within the authorized workspace directory. Version 3.5.4 patches the issue.

SiYuan is a personal knowledge management system. In versions prior to 3.5.4, the markdown feature allows unrestricted server side html-rendering which allows arbitrary file read (LFD). Version 3.5.4 fixes the issue.